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Belozersky Institute

GeneBee

Russian EMBnet Node

AliBee - Multiple Alignment
Max. number of motifs (10 to 300)
Length threshold(4 to 50)
Power threshold(2 to 20)
Coincidence ratio(0 to 1)
Minimum letter frequence 
Windows width(3 to 7)
Maximum number of shifts(1 to 100)
Minimum homology ratio(0 to 1)
How to process motifs
Method
Gap penalty (in SD units)(1 to 5)
Register size

Matrix
Colors

Motif frequences recalc
 
Yes No
Result Alignment Format:

Tree and Picture Options
Extra tree format
Picture formats
Bootstrap
Yes No
You can paste or edit your sequences right here (in FASTA format)
Example:
>SeqName1
MLPTAVLLVL AVSVAARDNA TCDGPCGLRF RQKLESGMRV
MYHNNRRYHT CGGILLNSHW VLTAAHCFKN KKKVT
>SeqName2
IVGGRRAQPQ EFPFLASIQK QGRPFCAGAL VHPRFVLTAA
RQQEQSRQTF SIRSISQNGY DPRQNLNDVL
>SeqName3
SRRTYTLTDY LKSTFR

Last updated - December 15, 2001.
Comments and bug-reports send to Vladimir Nikolaev